¹ØÓÚlife scienceµÄÎÊÌ⣺regulatory sequence - turnover and degenerate nature
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¹ØÓÚlife scienceµÄÎÊÌ⣺regulatory sequence - turnover and degenerate nature
Regulatory sequences (e.g., transcription factor binding sites), unlike protein-coding regions, are subject to rapid turnover.

Challenges (in regulatory sequence identification) included the large non-coding search space in the human genome (98% of 3¡Á109 bp), the small size and degenerate nature of transcription factor binding sites, and most importantly the lack of experimental training sets for computational methods to identify such sequences in a global manner.


ÉÏÃæÊÇpaperÀïÍ·µÄÔ­»°¡£¸ã²»Ã÷°×ÕâÀïµÄturnoverºÍdegenerate natureÊDz»ÊÇÒ»¸öÒâ˼£¿ ÊÇÖ¸sequence±¾Éí»á±ä»¯£¨mutation, etc.£©£¬»¹ÊÇ˵transcriotion factor is not binding to this cis element?
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×÷ÕߣºË®Ñ¼×Ó (µÈ¼¶£º14 - ÌìÈ˺ÍÒ»£¬·¢Ìû£º9284) ·¢±í£º2008-04-29 18:08:00¡¡ 2Â¥ ÆÀ·Ö£º
ÎÒ¾õµÃÓÐÏàͬµÄÒâ˼µ«turnoverÖ¸µÄÓ¦¸Ã²»ÊÇsequence±¾ÉíµÄ±ä»¯£¬¶øÊÇÒ»¸öregulatory sequence±»ÁíÒ»¸öregulatory sequenceËùÈ¡´ú¡£ Regulatory sequences (e.g., transcription factor binding sites), unlike protein-coding regions, are subject to rapid turnover. Õâ¾ä»°À´×Ô(Webb Miller et.al., "Comparative Genomics", annual review of Genomics and Human Genetics Vol.5:15-56) Õâ¾ä»°ºóÃæ¸úÁËreference¡£ÔÚreference38µÄabstractÖУ¬×÷ÕßÌáµ½£º"estimated that 32%-40% of the human functional sites are not functional in rodents. This is evidence that there is widespread turnover of transcription factor binding sites" ÔÚintroductionÖУ¬×÷Õß˵µ½:"Individual binding sites may exhibit relatively little conservation, either because of the degeneracy of the transcription factor binding requirements or because their small size makes it relatively likely that a new functional site will arise by chance." ËùÒÔÎÒµÄÀí½âÊÇ£¬TurnoverÖ¸µÄÊÇÒ»¸öregulatory sequence±»ÁíÒ»¸öregulatory sequenceËùÈ¡´ú¡£ ÔÚ½ø»¯ÖУ¬ÓÉÓÚregulatory sequenceÏà¶Ô½Ï¶Ì£¬ÒÔ¼ (more...)
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